Notes¶
- Mapping
ensembl_gene_idtohgnc_idvia old bionty API - Human cell markers ->
bionty.CellMarker().df - Cell ontology queries via pronto
- CellType statistics
- Exploring ensembl ftp
- EFO statistics
- Ensembl MySQL
- Ensembl REST query examples
- Ensembl gene version statistics
- Ensemble REST connection
- Comparing feather vs parquet
Gene: ensembl, release-107- MyGene & BioMart REST APIs & gene standardization
- Ontology managers
- Owlready2 based ontology manager
- Pydantic models for entities
- UniProtKB table ->
bionty.Protein().df - Uniprot REST API